What Is The Best Ecommerce Bookkeeping Software for Amazon Sellers in 2025?

Success in the Amazon marketplace isn’t just about discovering trending products or optimizing inventory—it’s about managing the backbone of your business: your finances.

By 2025, ecommerce is projected to generate over $6.8 trillion in sales.

And given ecommerce has exploded into a trillion-dollar global industry, accurate financial tracking is what will separate a thriving Amazon business from one struggling to keep up.

This is where ecommerce bookkeeping software saves the day—offering streamlined solutions to track revenue, manage expenses, and stay tax-compliant. But not all solutions are created equal.

When it comes to Amazon sellers, doola Bookkeeping stands out as the go-to choice, offering tailored features that empower you to focus on growth while staying on top of your finances.

Let’s explore why bookkeeping software is a game-changer for Amazon sellers and why doola Bookkeeping should be your ultimate solution.

Why Bookkeeping is Crucial for Amazon Sellers

For Amazon sellers, bookkeeping is more than just crunching numbers—it’s about staying in control of your business’s financial health. Here’s why it’s essential:

1. Tax Compliance

Accurate bookkeeping ensures your income and expenses are reported correctly, which is vital for meeting tax regulations. Mistakes or omissions can lead to audits, penalties, or even legal trouble. With precise records, you can confidently file taxes and claim deductions without fear of repercussions.

2. Profitability Tracking

Understanding your profit margins is key to making informed decisions about pricing, product sourcing, and expansion. Bookkeeping gives you a clear picture of your earnings after expenses, helping you identify which products or strategies are driving the most value.

3. Cash Flow Management

Mismanaged cash flow is a common reason businesses struggle.

Proper bookkeeping helps you monitor incoming and outgoing funds, preventing overspending and ensuring you have enough capital to cover expenses, seize new opportunities, and reinvest in growth.

4. Scalability

Whether you’re planning to expand your product line, hire staff, or attract investors, a solid bookkeeping system is essential. Accurate financial records demonstrate your business’s viability and build trust with stakeholders, making it easier to scale confidently.

Neglecting your bookkeeping can lead to financial chaos, unnecessary stress, and missed opportunities to grow your Amazon business.

Key Features to Look for in Ecommerce Bookkeeping Software

The right ecommerce bookkeeping software doesn’t just simplify accounting; it helps you navigate the complexities of running an Amazon business.

Here’s a detailed look at the must-have features to keep your financial operations seamless and stress-free:

📌 Integration with Amazon Seller Central

A seamless connection with Amazon ensures every sale, fee, refund, and chargeback is automatically tracked and accurately recorded. This eliminates the manual work of inputting data and ensures your records match what’s on Amazon, reducing discrepancies and saving time.

📌 Tax Features

Handling taxes can be overwhelming, but a robust bookkeeping software simplifies it with automated calculations. Look for features that manage sales tax compliance across various jurisdictions and calculate quarterly tax estimates so you can avoid underpayment penalties and stay ahead of deadlines.

📌 Expense Categorization

It’s essential to clearly distinguish between business and personal expenses. A good software automatically categorizes your expenses, making it easy to identify deductible costs and ensuring you’re prepared if the IRS comes knocking.

Here’s a list of FAQs to help you categorize your expenses properly and maintain a good standing with the IRS.

📌 Inventory Tracking

Managing inventory costs is critical for understanding profitability. Bookkeeping software with inventory tracking lets you monitor product costs, restocking needs, and the overall impact of inventory on your bottom line, helping you make smarter purchasing decisions.

📌 Reporting Tools

A clear view of your financial health is non-negotiable. Look for software that provides comprehensive reports, such as profit and loss statements, balance sheets, and cash flow summaries, so you can make data-driven decisions and strategize for growth.

📌 User-Friendly Interface

You shouldn’t need an accounting degree to manage your books. Prioritize software with intuitive dashboards and simple workflows, allowing you to focus more on growing your business and less on deciphering financial jargon.

doola Bookkeeping delivers on every one of these essential features, designed specifically with Amazon sellers in mind. From automatic syncing with Amazon Seller Central to detailed financial reporting and tax-ready records, doola ensures your bookkeeping is effortless and effective.

With a user-friendly interface and tailored solutions, doola Bookkeeping empowers Amazon sellers to stay organized, maximize profitability, and scale with confidence.

Benefits of Using Ecommerce Bookkeeping Software for Amazon Sellers

Leveraging ecommerce bookkeeping software isn’t just about staying organized—it’s a transformative investment that can elevate your business operations.

Here’s a deeper look into how it benefits Amazon sellers:

1. Time Savings

Managing the financial side of your business can be a time sink, especially with repetitive tasks like reconciling accounts and tracking expenses.

Bookkeeping software automates these processes, from categorizing transactions to generating financial reports, freeing up valuable hours for you to focus on growth-oriented activities like optimizing listings or exploring new markets.

2. Accuracy

Human errors in bookkeeping can lead to costly mistakes, from tax miscalculations to overlooked expenses. Automated software reduces these risks by ensuring every transaction—sales, refunds, fees, and more—is accurately recorded and categorized.

This precision not only protects your business but also builds trust with stakeholders and potential investors.

3. Scalability

As your Amazon business grows, so do its financial complexities.

The right ecommerce bookkeeping software scales effortlessly, accommodating higher transaction volumes and offering advanced features like multi-currency support for international sellers.

It evolves with your business, ensuring you’re always equipped to handle its needs, no matter how much it expands.

4. Tax Readiness

With ecommerce bookkeeping software, your records are always organized and up to date, making tax season stress-free. Many solutions also provide real-time tax insights, ensuring you’re prepared for quarterly estimates, sales tax compliance, and year-end filings without last-minute scrambling.

For Amazon sellers, embracing bookkeeping software isn’t just about convenience—it’s a strategic move that fosters financial peace of mind and paves the way for sustainable growth.

How to Choose the Best Ecommerce Bookkeeping Software for Your Needs

Finding the perfect bookkeeping software means aligning it with your unique business needs and goals. Here’s a handy checklist to guide your decision:

1. Business Size

If you’re aiming for growth, choose a software that scales with your business. It should handle increasing transaction volumes and offer advanced features as your operations expand.

2. Integration Capabilities

Ensure the software seamlessly connects with Amazon Seller Central and other platforms you rely on. Smooth integrations eliminate the need for manual data transfers, saving you time and reducing errors.

3. Features

Prioritize tools that match your business demands, like automated tax calculations, real-time expense tracking, inventory management, and robust reporting capabilities. These features simplify daily operations and provide actionable insights.

4. Pricing

Consider the software’s cost relative to the value it offers. A higher price may be worth it if the software provides advanced tools and excellent support that meet your needs.

5. Customer Support

When technical issues arise, reliable customer support can be a lifesaver. Look for software providers that offer accessible and knowledgeable support teams to keep your operations running smoothly.

With countless options available, choosing the right bookkeeping software might feel overwhelming. But doola makes it easier for you.

doola Bookkeeping ticks all the boxes and goes beyond to provide Amazon sellers with the tools and support they need to thrive.

Best Practices for Setting Up Ecommerce Bookkeeping Software

Once you’ve selected the right bookkeeping software, proper setup is key to maximizing its efficiency. Follow these steps to get started:

Step 1: Sync with Amazon

Connect the software to your Amazon Seller Central account to automate the import of sales, fees, and refunds. This integration saves time and ensures accuracy in your financial records.

Step 2: Categorize Expenses

Create clear categories for costs such as inventory, marketing, shipping, and operational expenses. Proper categorization helps track where your money is going and simplifies tax preparation.

Step 3: Link Bank Accounts

Connect your business bank accounts and credit cards to the software. This enables real-time tracking of all transactions and eliminates the hassle of manual data entry.

Step 5: Customize Reports

Configure the software to generate reports tailored to your needs, such as profit and loss statements, cash flow summaries, and tax-ready documents. Customization ensures you’re always monitoring the metrics that matter most.

Step 6: Regular Updates

Dedicate time weekly to review and update your records. Staying consistent prevents year-end chaos and keeps your books audit-ready.

By following these best practices, you’ll establish a smooth and effective bookkeeping system that supports your business growth.

Why doola Is the Best Ecommerce Bookkeeping Software for Amazon Sellers

When it comes to ecommerce bookkeeping software, doola offers an unmatched combination of ease, efficiency, and expertise.

Here’s why doola Bookkeeping is the top choice for Amazon sellers:

Amazon Integration

Seamlessly sync your financial data with Amazon Seller Central, eliminating manual imports. From sales to refunds, everything is tracked automatically to save you time and effort.

Catch-Up Bookkeeping

If you’ve fallen behind on your books, doola’s Catch-Up Bookkeeping service helps you get back on track. Whether it’s months of unrecorded transactions or missed tax deadlines, doola ensures your financial records are accurate and up-to-date.

All-in-One Accounting

doola combines everything you need into one intuitive platform—so no need for multiple tools anymore. From expense tracking to tax preparation, you can handle all aspects of your finances from one centralized dashboard.

Dedicated Bookkeeping

With doola, you’re never handling your books alone. Our team of dedicated bookkeeping experts works closely with you, offering personalized support to ensure your finances are in top shape.

Tax Filing Support

As a top-tier ecommerce bookkeeping software, doola helps you automatically track, calculate, and organize your taxes, including sales tax and quarterly estimates. You can now stay compliant without the usual stress of tax season.

Customizable Features

Every business is unique, and so are its financial needs. doola lets you customize everything—from expense categories to detailed profit and loss statements—ensuring your bookkeeping system works for you.

Transparent Pricing

Unlike its competitors, doola abstains from hidden fees or unexpected costs. With its basic ecommerce bookkeeping software priced at $25 per month, doola offers clear, upfront pricing plans tailored to fit your business’s size and needs.

Select from doola’s complete suite of bookkeeping services tailored for Amazon sellers.

With doola, you’re not just investing in software; you’re gaining a partner who understands the unique challenges of Amazon sellers.

Your Amazon Business Deserves the Best—Partner with doola Bookkeeping

Managing the constant stream of sales, expenses, and fees as an Amazon seller can feel overwhelming. But why manage it all by yourself when doola’s ecommerce bookkeeping software can take so much off your plate?

We handle it all, from tracking daily sales and expenses to reconciling accounts, ensuring your books are always accurate and up-to-date. This level of precision not only saves you time but provides peace of mind knowing your finances are in expert hands.

Our financial reports go beyond basic income statements, offering detailed insights into revenues, expenses, refunds, returns, and reimbursements—covering every factor that impacts your bottom line.

And it doesn’t end there. With specialized tax filing services, we guide you through complex tax laws year-round, helping you minimize liabilities while staying fully compliant.

Are you ready to have a partner that truly understands your journey as an Amazon seller?

Book a demo today and discover how doola can transform your financial management.

FAQs

What is the best ecommerce bookkeeping software for Amazon sellers?

The best software is one that integrates seamlessly with Amazon Seller Central, offers robust tax features, and provides detailed financial reporting—like doola Bookkeeping.

Can bookkeeping software integrate with Amazon Seller Central?

Yes, top-notch solutions like doola Bookkeeping sync directly with Amazon, automating sales, fees, and refund tracking.

How does bookkeeping software help with taxes?

Bookkeeping software automates tax calculations, organizes expense data, and prepares accurate reports to ensure compliance and simplify tax filing.

Is ecommerce bookkeeping software suitable for small Amazon businesses?

Absolutely! Solutions like doola Bookkeeping cater to businesses of all sizes, offering scalable features tailored to small sellers.

What’s the cost range for reliable bookkeeping software?

The cost varies, but reliable options like doola offer transparent pricing plans that balance affordability and robust functionality.