The Top 10 Ecommerce Bookkeeping Software Options for Businesses in 2024

Managing the finances of an ecommerce business can be overwhelming, especially with countless transactions, sales channels, and tax obligations to track. 

That’s where doola Bookkeeping software steps in, streamlining financial operations and ensuring accuracy.

With technology evolving rapidly, 2024 brings a suite of ecommerce bookkeeping software designed to make bookkeeping effortless for entrepreneurs. 

In this guide, we’ll dive into the best bookkeeping software options, highlight their benefits, and provide practical tips for choosing the right tool for your business. Let’s get started!

What Should I Consider When Choosing Ecommerce Bookkeeping Software?

Selecting the ideal bookkeeping software for your ecommerce business isn’t a one-size-fits-all approach. Your choice should align with your business size, operations, and future goals.

Here are the critical factors to weigh:

Integration with Ecommerce Platforms 

Ensure the software seamlessly integrates with popular platforms like Shopify, WooCommerce, or Amazon.

Ease of Use

The interface should be user-friendly, even for those without accounting expertise.

Automation Features

Look for automated invoicing, expense tracking, and tax calculations to save time and reduce errors.

Customization and Scalability

As your business grows, your bookkeeping software should scale with you, offering advanced features like multi-currency support or advanced reporting.

Cost

Balance the features you need with your budget. Some tools offer tiered pricing plans, making it easier to start small and expand as necessary.

Security

Data protection is paramount. Choose software with robust encryption and compliance with data privacy regulations.

Taking the time to assess these factors ensures you invest in software that meets your current and future needs.

How We Chose the Top 10 Best Bookkeeping Options

We analyzed dozens of bookkeeping software solutions for ecommerce businesses, considering key factors like features, user reviews, integration capabilities, and pricing. 

Our recommendations prioritize tools that cater specifically to ecommerce needs, offering robust integrations with platforms, automation for routine tasks, and scalability to grow with your business. 

Whether you’re a solo entrepreneur or a scaling enterprise, our list includes options tailored for all.

Top 10 Ecommerce Bookkeeping Software Options in 2024 

doola Bookkeeping 

doola is an affordable yet powerful bookkeeping software explicitly designed for ecommerce businesses. 

What makes doola unique is the inclusion of a dedicated bookkeeper in different packages, ensuring personalized support to keep your financial records accurate and tax-ready. 

At just $25/month, doola Bookkeeping offers seamless integration with Shopify, Amazon, and other platforms, automating expense tracking and real-time financial reporting. 

This hybrid approach of combining technology with human expertise makes doola the perfect choice for businesses looking to scale without sacrificing financial clarity.

Intuit QuickBooks Online

QuickBooks Online is a versatile solution that starts at $30/month and is suitable for e-commerce businesses of all sizes. 

Its robust tools include invoicing, expense tracking, and bank reconciliation, making it a staple for managing multi-channel sales. 

With integrations for Shopify and Etsy, QuickBooks simplifies financial management for growing ecommerce businesses while providing advanced reporting features.

FreshBooks

FreshBooks offers an entry-level pricing plan of $19/month, making it a cost-effective choice for small ecommerce businesses. 

Known for its intuitive design, FreshBooks simplifies invoicing, payment tracking, and expense management. 

For ecommerce sellers, its integrations with WooCommerce and Squarespace streamline financial tracking, making it a practical solution for solopreneurs and small teams.

Xero

Xero’s plans start at $20/month and offer features like bank reconciliation, invoicing, and financial reporting. 

It’s a powerful tool for ecommerce businesses, with integrations for Shopify, PayPal, and Stripe. Xero also supports multi-currency transactions, making it an excellent option for international sellers.

Wave

Wave stands out as a free bookkeeping software, making it ideal for startups and small ecommerce businesses with tight budgets. 

It offers essential features like income tracking, invoicing, and basic reporting without any subscription fees. 

While it lacks advanced tools, Wave’s no-cost structure is perfect for businesses in their early stages.

Zoho Books

Zoho Books offers a highly affordable plan starting at $15/month, packed with automation tools like recurring invoices and tax management. 

It integrates seamlessly with Shopify and other platforms, providing a budget-friendly solution for ecommerce businesses looking to optimize their financial operations.

Bench 

Bench is a premium service, priced at $349/month, designed for businesses seeking a hands-off bookkeeping experience. 

It combines bookkeeping software with dedicated bookkeepers who handle your financial categorization, reconciliation, and reporting. 

Bench’s pricing reflects its high level of professional support, making it suitable for established ecommerce businesses.

A2X

A2X specializes in revenue reconciliation and ecommerce accounting. While its pricing is custom-based, it’s tailored for businesses managing high volumes of transactions. 

Its integrations with Amazon, Shopify, and Walmart streamline complex financial processes, making it an essential tool for large-scale sellers.

NetSuite by Oracle 

NetSuite, a high-end solution, offers customized pricing based on your business’s needs. It’s designed for enterprise-level ecommerce businesses, providing advanced features like inventory management, financial planning, and real-time reporting. 

While it comes at a premium cost, its robust tools make it worth the investment for businesses requiring precision and scalability.

Finally

Finally uses AI-driven automation to simplify bookkeeping for ecommerce businesses. Pricing is tailored to your business size and needs, offering integrations with platforms like Shopify. 

Its real-time insights and automated transaction categorization make it a modern choice for scaling businesses.

What Are the Main Benefits of Using Bookkeeping Software?

Using bookkeeping software transforms financial management for ecommerce businesses. 

Here’s how:

• Time Savings: Automating routine tasks like invoicing and reconciling bank transactions frees up valuable time.

• Improved Accuracy: Automated calculations reduce errors, ensuring your books are precise and compliant with tax regulations.

• Better Insights: Advanced reporting and real-time tracking offer a clear view of your financial health, enabling informed decision-making.

• Scalability: As your business grows, modern software adapts, handling increased transactions and complexity effortlessly.

• Cost Efficiency: By streamlining processes, software reduces the need for expensive manual bookkeeping or accounting services.

What’s the Difference Between Bookkeeping Software and a Dedicated Bookkeeping Service?

Bookkeeping software provides tools for managing your finances independently, offering automation and insights that save time and enhance accuracy.

In contrast, a dedicated bookkeeping service, like what doola offers, combines software with human expertise. 

These services handle everything from categorizing expenses to generating reports, making them ideal for business owners who prefer a hands-off approach. 

Choosing between the two depends on your budget, time availability, and comfort level with financial management.

Bonus: 5 Ecommerce Bookkeeping Tips

• Separate Personal and Business Finances: Get a dedicated business bank account to keep accounts distinct, simplify bookkeeping, and maintain financial clarity.

• Automate Where Possible: To save time, use software features like automated invoicing, expense tracking, and sales tax calculations.

• Track Inventory Costs: Monitor your inventory expenses regularly to avoid underpricing or overstocking.

• Reconcile Accounts Monthly: Regular reconciliation ensures your books are accurate and highlights discrepancies early.

• Leverage Reports for Decision-Making: Use software-generated insights to identify trends and optimize your business strategies.

Take the Next Step With doola Bookkeeping

Ready to take the stress out of managing your ecommerce finances? doola Bookkeeping is designed for ecommerce entrepreneurs like you. 

With intuitive features, seamless integrations, and dedicated support, doola simplifies bookkeeping so you can focus on growing your business. 

Don’t let your finances hold you back—experience the ease and accuracy of doola Bookkeeping.

Book a demo today.  

FAQs

1. Do I need bookkeeping software if I have a small ecommerce store?  

Yes! Bookkeeping software helps you stay organized, even as a small business, and prepares you for scaling operations.

2. Is free bookkeeping software like Wave sufficient for an ecommerce business?  

Wave is free and hence limited. But as your business grows, you may need advanced features that paid solutions offer.

3. Can I use ecommerce bookkeeping software for multiple sales channels?  

Absolutely. Many options, like doola and A2X, are built to integrate with multiple platforms, streamlining multi-channel selling.

4. What’s the best bookkeeping software for international ecommerce?  

Zoho Books and Xero are excellent for businesses dealing with multi-currency transactions and international sales.

5. How does doola stand out from other bookkeeping software?  

doola combines powerful automation with personalized support, offering an unparalleled experience for ecommerce entrepreneurs.